Transcript: lnc-KHDRBS3-2:1

Basic information

LNCipedia transcript ID: lnc-KHDRBS3-2:1 
LNCipedia gene ID: lnc-KHDRBS3-2
Ensembl Gene ID: ENSG00000253248
Ensembl Transcript ID: ENST00000502901
Location (hg38): chr8:136047021-136166122
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502901; ENST00000502901.2; RP11-149P24.1-002; OTTHUMT00000377376.1; NONHSAT129301; ENST00000502901.6
Alternative gene names: ENSG00000253248; RP11-149P24.1; ENSG00000253248.1; OTTHUMG00000164124.1; ENSG00000253248.5; AC079098.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.6705 non-coding 
CPAT coding probability 12.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHDRBS3-2:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KHDRBS3-2:1
3.1 lnc-KHDRBS3-2:1
4.0 lnc-KHDRBS3-2:1
4.1 lnc-KHDRBS3-2:1
5.0 lnc-KHDRBS3-2:1
5.1 lnc-MYC-73:1
5.2 lnc-KHDRBS3-2:1