Transcript: lnc-KDM5D-2:2

Basic information

LNCipedia transcript ID: lnc-KDM5D-2:2 
LNCipedia gene ID: lnc-KDM5D-2
Location (hg38): chrY:19466940-19503148
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 942 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000539453.1; BCORP1-201
Alternative gene names: ENSG00000215580.4; BCORP1; OTTHUMG00000036511.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 449.0756 coding 
CPAT coding probability 93.10% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KDM5D-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KDM5D-2:2
4.0 lnc-KDM5D-2:2
4.1 lnc-KDM5D-2:2
5.0 lnc-KDM5D-2:2
5.1 lnc-DAZ1-70:2
5.2 lnc-KDM5D-2:2