Transcript: lnc-KDM5A-2:1

Basic information

LNCipedia transcript ID: lnc-KDM5A-2:1 
LNCipedia gene ID: lnc-KDM5A-2
Ensembl Gene ID: ENSG00000255746
Ensembl Transcript ID: ENST00000540868
RefSeq ID: NR_120482
Location (hg38): chr12:253442-257299
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 503 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000540868.1; RP11-283I3.4-001; OTTHUMT00000397811.1; NONHSAT025323; NR_120482; NR_120482.1
Alternative gene names: ENSG00000255746.1; RP11-283I3.4; OTTHUMG00000168054.1; AC007406.2; LOC102723544


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.2806 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM5A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KDM5A-2:1
4.0 lnc-KDM5A-2:1
4.1 lnc-KDM5A-2:1
5.0 lnc-KDM5A-2:1
5.1 lnc-CHD4-124:2
5.2 lnc-KDM5A-2:1