Transcript: lnc-KDM3A-2:1

Basic information

LNCipedia transcript ID: lnc-KDM3A-2:1 
LNCipedia gene ID: lnc-KDM3A-2
Ensembl Gene ID: ENSG00000228363
Ensembl Transcript ID: ENST00000439077
Location (hg38): chr2:86562075-86617441
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 514 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439077.1; AC015971.2-002; OTTHUMT00000330084.1; NONHSAT072113
Alternative gene names: ENSG00000228363.1; AC015971.2; OTTHUMG00000153204.2; ENSG00000228363.2; AC015971.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.3979 non-coding 
CPAT coding probability 5.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM3A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RMND5A-1:1
4.0 lnc-KDM3A-1:2
4.1 lnc-KDM3A-1:2
5.0 lnc-KDM3A-1:2
5.1 lnc-POLE4-225:1
5.2 lnc-KDM3A-2:1