Transcript: lnc-KCTD8-1:1

Basic information

LNCipedia transcript ID: lnc-KCTD8-1:1 
LNCipedia gene ID: lnc-KCTD8-1
Ensembl Gene ID: ENSG00000250863
Ensembl Transcript ID: ENST00000509098
Location (hg38): chr4:43980006-43981620
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509098; ENST00000509098.1; RP11-663P9.1-001; OTTHUMT00000360608.1; NONHSAT096216
Alternative gene names: ENSG00000250863; RP11-663P9.1; ENSG00000250863.1; OTTHUMG00000160444.1; AC110799.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.7529 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCTD8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCTD8-1:1
3.1 lnc-KCTD8-1:1
4.0 lnc-KCTD8-1:1
4.1 lnc-KCTD8-1:1
5.0 lnc-KCTD8-1:1
5.1 lnc-GABRA4-14:1
5.2 lnc-KCTD8-1:1