Transcript: lnc-KCTD1-2:3

Basic information

LNCipedia transcript ID: lnc-KCTD1-2:3 
LNCipedia gene ID: lnc-KCTD1-2
Location (hg38): chr18:26747895-26754031
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 658 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026469; NONHSAT058760
Alternative gene names: XLOC_012796; linc-KCTD1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.3524 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCTD1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AQP4-1:2
3.1 lnc-AQP4-2:2
4.0 lnc-AQP4-2:2
4.1 lnc-AQP4-2:2
5.0 lnc-AQP4-2:2
5.1 lnc-SMAD2-147:2
5.2 lnc-KCTD1-2:3