Transcript: lnc-KCNRG-5:1

Basic information

LNCipedia transcript ID: lnc-KCNRG-5:1 
LNCipedia gene ID: lnc-KCNRG-5
Location (hg38): chr13:50064680-50066599
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 787 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021550; ENST00000435843; ENST00000435843.1; RP11-34F20.5-001; OTTHUMT00000044963.1; NONHSAT033806
Alternative gene names: XLOC_010389; linc-RNASEH2B-2; ENSG00000231862; RP11-34F20.5; ENSG00000231862.1; OTTHUMG00000016929.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.9578 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNRG-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLEU1-1:1
3.1 lnc-DLEU1-1:1
4.0 lnc-DLEU1-1:1
4.1 lnc-DLEU1-1:1
5.0 lnc-DLEU1-1:1
5.1 lnc-KL-191:1
5.2 lnc-KCNRG-5:1