Transcript: lnc-KCNMA1-2:1

Basic information

LNCipedia transcript ID: lnc-KCNMA1-2:1 
LNCipedia gene ID: lnc-KCNMA1-2
Location (hg38): chr10:76282670-76285084
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 462 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423541.1; RP11-369F10.3-001; OTTHUMT00000048838.1; NONHSAT014124
Alternative gene names: ENSG00000232704.1; RP11-369F10.3; OTTHUMG00000018531.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.4677 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNMA1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMA1-2:1
4.0 lnc-KCNMA1-2:1
4.1 lnc-KCNMA1-2:1
5.0 lnc-KCNMA1-2:1
5.1 lnc-VSIR-66:1
5.2 lnc-KCNMA1-2:1