Transcript: lnc-KCNJ12-2:1

Basic information

LNCipedia transcript ID: lnc-KCNJ12-2:1 
LNCipedia gene ID: lnc-KCNJ12-2
Ensembl Gene ID: ENSG00000264023
Ensembl Transcript ID: ENST00000582990
Location (hg38): chr17:21457434-21458989
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582990.1; RP11-728E14.2-002; OTTHUMT00000444317.1; NONHSAT052184
Alternative gene names: ENSG00000264023.1; RP11-728E14.2; OTTHUMG00000179015.1; AC068418.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.8741 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNJ12-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNJ12-2:1
4.0 lnc-KCNJ12-2:1
4.1 lnc-KCNJ12-2:1
5.0 lnc-KCNJ12-2:1
5.1 lnc-PIPOX-94:1
5.2 lnc-KCNJ12-2:1