Transcript: lnc-KCNH1-1:7

Basic information

LNCipedia transcript ID: lnc-KCNH1-1:7 
LNCipedia gene ID: lnc-KCNH1-1
Location (hg38): chr1:210290171-210292405
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001798; NONHSAT009256
Alternative gene names: XLOC_001188; linc-IRF6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.5388 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNH1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf133-1:2
3.1 lnc-C1orf133-1:2
4.0 lnc-C1orf133-1:2
4.1 lnc-C1orf133-1:2
5.0 lnc-C1orf133-1:2
5.1 lnc-IRF6-13:6
5.2 lnc-KCNH1-1:7