Transcript: lnc-KCNH1-1:5

Basic information

LNCipedia transcript ID: lnc-KCNH1-1:5 
LNCipedia gene ID: lnc-KCNH1-1
Location (hg38): chr1:210290442-210293229
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 367 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001799; NONHSAT009257
Alternative gene names: XLOC_001188; linc-IRF6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.1698 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNH1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf133-1:1
3.1 lnc-C1orf133-1:1
4.0 lnc-C1orf133-1:1
4.1 lnc-C1orf133-1:1
5.0 lnc-C1orf133-1:1
5.1 lnc-IRF6-13:4
5.2 lnc-KCNH1-1:5