Transcript: lnc-KCNE1B-11:1

Basic information

LNCipedia transcript ID: lnc-KCNE1B-11:1 
LNCipedia gene ID: lnc-KCNE1B-11
Ensembl Gene ID: ENSG00000279501
Ensembl Transcript ID: ENST00000623236
Location (hg38): chr21:8996496-9018670
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 227 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623236.1
Alternative gene names: ENSG00000279501.1; bP-2171C21.3; CR392039.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 44.0228 non-coding 
CPAT coding probability 42.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNE1B-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TPTE-11:1
4.1 lnc-TPTE-11:1
5.0 lnc-TPTE-11:1
5.1 lnc-N6AMT1-152:1
5.2 lnc-KCNE1B-11:1