Transcript: lnc-KCNC2-1:1

Basic information

LNCipedia transcript ID: lnc-KCNC2-1:1 
LNCipedia gene ID: lnc-KCNC2-1
Ensembl Gene ID: ENSG00000257386
Ensembl Transcript ID: ENST00000550926
Location (hg38): chr12:74538145-74538633
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 375 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550926.1; RP11-56G10.2-001; OTTHUMT00000405463.1; NONHSAT029510
Alternative gene names: ENSG00000257386.1; RP11-56G10.2; OTTHUMG00000169696.1; AC025257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 125.3812 coding 
CPAT coding probability 7.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNC2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNC2-1:1
4.0 lnc-KCNC2-1:1
4.1 lnc-KCNC2-1:1
5.0 lnc-KCNC2-1:1
5.1 lnc-LRRC10-40:2
5.2 lnc-KCNC2-1:1