Transcript: lnc-KANTR-23:26

Basic information

LNCipedia transcript ID: lnc-KANTR-23:26 
LNCipedia gene ID: lnc-KANTR-23
Location (hg38): chrX:53169097-53170914
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1818 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT137167; ENST00000603385.1
Alternative gene names: ENSG00000270189.1; RP11-258C19.7; Spasm


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3298 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KANTR-23:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPYL2-3:1
4.0 KANTR:15
4.1 KANTR:15
5.0 KANTR:15
5.1 lnc-TSR2-23:26
5.2 lnc-KANTR-23:26