Transcript: lnc-KANTR-23:20

Basic information

LNCipedia transcript ID: lnc-KANTR-23:20 
LNCipedia gene ID: lnc-KANTR-23
Location (hg38): chrX:53094386-53099613
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 231 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1444:1
Alternative gene names: Spasm


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KANTR-23:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 KANTR:10
4.1 KANTR:10
5.0 KANTR:10
5.1 lnc-TSR2-23:20
5.2 lnc-KANTR-23:20