Transcript: lnc-JUN-2:18

Basic information

LNCipedia transcript ID: lnc-JUN-2:18 
LNCipedia gene ID: lnc-JUN-2
Ensembl Gene ID: ENSG00000231740
Ensembl Transcript ID: ENST00000424592
Location (hg38): chr1:58838448-58851254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 395 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424592; ENST00000424592.1; RP11-63G10.2-001; OTTHUMT00000023039.1; NONHSAT003535
Alternative gene names: ENSG00000231740; RP11-63G10.2; ENSG00000231740.1; OTTHUMG00000008374.1; AL136985.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -484.0739 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-2:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JUN-1:1
3.1 lnc-JUN-1:1
4.0 lnc-JUN-1:1
4.1 lnc-JUN-2:18
5.0 lnc-JUN-2:18
5.1 lnc-C8B-31:18
5.2 lnc-JUN-2:18