Transcript: lnc-JMJD7-PLA2G4B-2:13

Basic information

LNCipedia transcript ID: lnc-JMJD7-PLA2G4B-2:13 
LNCipedia gene ID: lnc-JMJD7-PLA2G4B-2
Ensembl Gene ID: ENSG00000174171
Ensembl Transcript ID: ENST00000562920
Location (hg38): chr15:41895185-41895943
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 400 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562920.1; RP11-23P13.6-004; OTTHUMT00000420242.1; NONHSAT041983
Alternative gene names: ENSG00000174171.3; RP11-23P13.6; OTTHUMG00000172721.1; ENSG00000174171.4; ENSG00000174171.5; AC020659.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -362.9292 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD7-PLA2G4B-2:13 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JMJD7-PLA2G4B-1:4
4.0 lnc-JMJD7-PLA2G4B-2:13
4.1 lnc-JMJD7-PLA2G4B-2:13
5.0 lnc-JMJD7-PLA2G4B-2:13
5.1 lnc-TMEM62-13:21
5.2 lnc-JMJD7-PLA2G4B-2:13