Transcript: lnc-JAG1-2:1

Basic information

LNCipedia transcript ID: lnc-JAG1-2:1 
LNCipedia gene ID: lnc-JAG1-2
Ensembl Gene ID: ENSG00000232900
Ensembl Transcript ID: ENST00000448859
RefSeq ID: NR_109866
Location (hg38): chr20:10875333-10909272
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2006 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000448859.1; RP4-697P8.3-001; OTTHUMT00000078011.1; NONHSAT078616; NR_109866; NR_109866.1
Alternative gene names: ENSG00000232900.1; RP4-697P8.3; OTTHUMG00000031880.1; AL050403.1; LOC101929413


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.5367 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAG1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JAG1-2:1
4.0 lnc-JAG1-2:1
4.1 lnc-JAG1-2:1
5.0 lnc-JAG1-2:1
5.1 lnc-JAG1-2:1
5.2 lnc-JAG1-2:1