Transcript: lnc-JAG1-15:4

Basic information

LNCipedia transcript ID: lnc-JAG1-15:4 
LNCipedia gene ID: lnc-JAG1-15
Location (hg38): chr20:11454190-11455623
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1434 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054261.1|FTMT27800000470.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.3779 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAG1-15:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-JAG1-15:4
5.0 lnc-JAG1-15:4
5.1 lnc-JAG1-15:4
5.2 lnc-JAG1-15:4