Transcript: lnc-ITPR2-2:5

Basic information

LNCipedia transcript ID: lnc-ITPR2-2:5 
LNCipedia gene ID: lnc-ITPR2-2
Location (hg38): chr12:26201853-26271920
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 12185 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000256234.1|MICT00000075627.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.7438 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR2-2:5 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITPR2-2:5
5.0 lnc-ITPR2-2:5
5.1 lnc-WBP11-90:7
5.2 lnc-ITPR2-2:5