Transcript: lnc-ITPR2-2:4

Basic information

LNCipedia transcript ID: lnc-ITPR2-2:4 
LNCipedia gene ID: lnc-ITPR2-2
Ensembl Gene ID: ENSG00000256234
Ensembl Transcript ID: ENST00000540392
Location (hg38): chr12:26211164-26335856
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 699 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540392.1; RP11-283G6.4-001; OTTHUMT00000402725.1; NONHSAT027396
Alternative gene names: ENSG00000256234.1; RP11-283G6.4; OTTHUMG00000169176.1; AC022509.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.4699 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR2-2:4 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITPR2-3:1
4.0 lnc-ITPR2-3:1
4.1 lnc-ITPR2-2:4
5.0 lnc-ITPR2-2:4
5.1 lnc-WBP11-90:1
5.2 lnc-ITPR2-2:4