Transcript: lnc-ITPA-4:4

Basic information

LNCipedia transcript ID: lnc-ITPA-4:4 
LNCipedia gene ID: lnc-ITPA-4
Location (hg38): chr20:3239699-3245559
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5724 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000052299.1|MICT00000212906.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.2321 non-coding 
CPAT coding probability 15.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPA-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITPA-4:4
5.0 lnc-ITPA-4:4
5.1 lnc-MAVS-11:3
5.2 lnc-ITPA-4:4