Transcript: lnc-ITGB1-6:8

Basic information

LNCipedia transcript ID: lnc-ITGB1-6:8 
LNCipedia gene ID: lnc-ITGB1-6
Ensembl Gene ID: ENSG00000233387
Ensembl Transcript ID: ENST00000414308
Location (hg38): chr10:33096257-33116672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017947; ENST00000414308; ENST00000414308.1; RP11-342D11.3-001; OTTHUMT00000047515.1; NONHSAT012673
Alternative gene names: XLOC_008774; linc-ITGB1; ENSG00000233387; RP11-342D11.3; ENSG00000233387.1; OTTHUMG00000017937.1; AL121748.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2641 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB1-6:8 no no no no

Available literature

  1. Yan (2017), Long noncoding RNA linc-ITGB1 promotes cell migration and invasion in human breast cancer., Biotechnol. Appl. Biochem.
  2. Wang (2015), Long non-coding RNA Linc-ITGB1 knockdown inhibits cell migration and invasion in GBC-SD/M and GBC-SD gallbladder cancer cell lines., Chem Biol Drug Des


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRP1-1:2
3.1 lnc-NRP1-1:2
4.0 lnc-NRP1-1:2
4.1 lnc-ITGB1-6:8
5.0 lnc-ITGB1-6:8
5.1 lnc-CUL2-19:8
5.2 lnc-ITGB1-6:8