Transcript: lnc-ITGB1-6:7

Basic information

LNCipedia transcript ID: lnc-ITGB1-6:7 
LNCipedia gene ID: lnc-ITGB1-6
Location (hg38): chr10:33073500-33116783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1182 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018476; NONHSAT012672
Alternative gene names: XLOC_008774; linc-ITGB1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.4969 non-coding 
CPAT coding probability 15.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB1-6:7 no no no no

Available literature

  1. Yan (2017), Long noncoding RNA linc-ITGB1 promotes cell migration and invasion in human breast cancer., Biotechnol. Appl. Biochem.
  2. Wang (2015), Long non-coding RNA Linc-ITGB1 knockdown inhibits cell migration and invasion in GBC-SD/M and GBC-SD gallbladder cancer cell lines., Chem Biol Drug Des


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRP1-1:1
3.1 lnc-NRP1-1:1
4.0 lnc-NRP1-1:1
4.1 lnc-ITGB1-6:7
5.0 lnc-ITGB1-6:7
5.1 lnc-CUL2-19:7
5.2 lnc-ITGB1-6:7