Transcript: lnc-ITGB1-6:3

Basic information

LNCipedia transcript ID: lnc-ITGB1-6:3 
LNCipedia gene ID: lnc-ITGB1-6
Location (hg38): chr10:33096257-33116807
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 687 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233387.1|ENST00000414308.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.2641 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB1-6:3 no no no no

Available literature

  1. Yan (2017), Long noncoding RNA linc-ITGB1 promotes cell migration and invasion in human breast cancer., Biotechnol. Appl. Biochem.
  2. Wang (2015), Long non-coding RNA Linc-ITGB1 knockdown inhibits cell migration and invasion in GBC-SD/M and GBC-SD gallbladder cancer cell lines., Chem Biol Drug Des


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITGB1-6:3
5.0 lnc-ITGB1-6:3
5.1 lnc-CUL2-19:6
5.2 lnc-ITGB1-6:3