Transcript: lnc-ITGB1-1:1

Basic information

LNCipedia transcript ID: lnc-ITGB1-1:1 
LNCipedia gene ID: lnc-ITGB1-1
Location (hg38): chr10:32887261-32889311
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2051 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000609742.1
Alternative gene names: ENSG00000273038.1; RP11-479G22.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0085 non-coding 
CPAT coding probability 55.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ITGB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGB1-1:1
4.0 lnc-ITGB1-1:1
4.1 lnc-ITGB1-1:1
5.0 lnc-ITGB1-1:1
5.1 lnc-CUL2-25:1
5.2 lnc-ITGB1-1:1