Transcript: lnc-ITGA9-2:2

Basic information

LNCipedia transcript ID: lnc-ITGA9-2:2 
LNCipedia gene ID: lnc-ITGA9-2
Ensembl Gene ID: ENSG00000198590
Ensembl Transcript ID: ENST00000425932
Location (hg38): chr3:37386269-37418101
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1528 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425932.5
Alternative gene names: ENSG00000198590.11; C3orf35


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.5865 non-coding 
CPAT coding probability 17.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA9-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf35-1:4
4.1 lnc-C3orf35-1:4
5.0 lnc-C3orf35-1:4
5.1 lnc-CNOT10-46:2
5.2 lnc-ITGA9-2:2