Transcript: lnc-ITGA6-1:4

Basic information

LNCipedia transcript ID: lnc-ITGA6-1:4 
LNCipedia gene ID: lnc-ITGA6-1
Ensembl Gene ID: ENSG00000232555
Ensembl Transcript ID: ENST00000445613
Location (hg38): chr2:172315287-172323737
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003050; ENST00000445613; ENST00000445613.1; AC104088.1-001; OTTHUMT00000334500.1; NONHSAT075498
Alternative gene names: XLOC_001757; linc-ITGA6-1; ENSG00000232555; AC104088.1; ENSG00000232555.1; OTTHUMG00000154230.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -314.5237 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA6-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGA6-1:4
3.1 lnc-ITGA6-1:4
4.0 lnc-ITGA6-1:4
4.1 lnc-ITGA6-1:4
5.0 lnc-ITGA6-1:4
5.1 lnc-UBR3-35:8
5.2 lnc-ITGA6-1:4