Transcript: lnc-IRX1-4:1

Basic information

LNCipedia transcript ID: lnc-IRX1-4:1 
LNCipedia gene ID: lnc-IRX1-4
Location (hg38): chr5:3337609-3345257
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1512 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009848; NONHSAT100117
Alternative gene names: XLOC_004260; linc-IRX1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.2467 non-coding 
CPAT coding probability 23.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX1-4:1
3.1 lnc-IRX1-4:1
4.0 lnc-IRX1-4:1
4.1 lnc-IRX1-4:1
5.0 lnc-IRX1-4:1
5.1 lnc-CARD6-345:1
5.2 lnc-IRX1-4:1