Transcript: lnc-IRF8-1:1

Basic information

LNCipedia transcript ID: lnc-IRF8-1:1 
LNCipedia gene ID: lnc-IRF8-1
Location (hg38): chr16:85945419-85950745
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2735 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024489; NONHSAT144156
Alternative gene names: XLOC_011809; linc-FOXF1-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0557 non-coding 
CPAT coding probability 37.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IRF8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF8-1:1
3.1 lnc-IRF8-1:1
4.0 lnc-IRF8-1:1
4.1 lnc-IRF8-1:1
5.0 lnc-IRF8-1:1
5.1 lnc-COX4I1-6:6
5.2 lnc-IRF8-1:1