Transcript: lnc-IRF2BP2-2:7

Basic information

LNCipedia transcript ID: lnc-IRF2BP2-2:7 
LNCipedia gene ID: lnc-IRF2BP2-2
Location (hg38): chr1:234701856-234724104
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 15827 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098840.1|ENCT00000039311.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.4978 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF2BP2-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IRF2BP2-2:7
5.0 lnc-IRF2BP2-2:7
5.1 lnc-SIPA1L2-34:2
5.2 lnc-IRF2BP2-2:7