Transcript: lnc-IRF2BP2-11:6

Basic information

LNCipedia transcript ID: lnc-IRF2BP2-11:6 
LNCipedia gene ID: lnc-IRF2BP2-11
Location (hg38): chr1:234830204-234836409
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5233 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098900.1|MICT00000033331.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.7325 non-coding 
CPAT coding probability 13.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF2BP2-11:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IRF2BP2-11:6
5.0 lnc-IRF2BP2-11:6
5.1 lnc-SIPA1L2-39:6
5.2 lnc-IRF2BP2-11:6