Transcript: lnc-IRF1-6:1

Basic information

LNCipedia transcript ID: lnc-IRF1-6:1 
LNCipedia gene ID: lnc-IRF1-6
Location (hg38): chr5:132497292-132498308
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1017 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081246.1|FTMT21800009504.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -203.0792 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IRF1-6:1
5.0 lnc-IRF1-6:1
5.1 lnc-TIFAB-68:1
5.2 lnc-IRF1-6:1