Transcript: lnc-IRAK1BP1-10:1

Basic information

LNCipedia transcript ID: lnc-IRAK1BP1-10:1 
LNCipedia gene ID: lnc-IRAK1BP1-10
Location (hg38): chr6:79270378-79270952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 260 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011329; ENST00000435151; ENST00000435151.1; RP11-46B11.4-001; OTTHUMT00000041303.1; NONHSAT113681
Alternative gene names: XLOC_005359; linc-SH3BGRL2-3; ENSG00000229655; RP11-46B11.4; ENSG00000229655.1; OTTHUMG00000015075.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.2126 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRAK1BP1-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3BGRL2-3:1
3.1 lnc-SH3BGRL2-3:1
4.0 lnc-SH3BGRL2-3:1
4.1 lnc-SH3BGRL2-3:1
5.0 lnc-SH3BGRL2-3:1
5.1 lnc-CYB5R4-47:1
5.2 lnc-IRAK1BP1-10:1