Transcript: lnc-IQCM-2:2

Basic information

LNCipedia transcript ID: lnc-IQCM-2:2 
LNCipedia gene ID: lnc-IQCM-2
Location (hg38): chr4:149429932-149815828
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2138 bp
Exons: 17
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000511993; ENST00000511993.1; RP11-526A4.1-001; OTTHUMT00000364766.1; ENST00000511993.5
Alternative gene names: ENSG00000234828; RP11-526A4.1; ENSG00000234828.3; OTTHUMG00000161394.1; ENSG00000234828.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 392.7231 coding 
CPAT coding probability 97.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IQCM-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRBA-2:2
3.1 lnc-LRBA-2:2
4.0 lnc-LRBA-2:2
4.1 lnc-LRBA-2:2
5.0 lnc-LRBA-2:2
5.1 lnc-NR3C2-13:2
5.2 lnc-IQCM-2:2