Transcript: lnc-INAVA-1:3

Basic information

LNCipedia transcript ID: lnc-INAVA-1:3 
LNCipedia gene ID: lnc-INAVA-1
Ensembl Gene ID: ENSG00000229191
Ensembl Transcript ID: ENST00000446333
Location (hg38): chr1:201023949-201027790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2497 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446333; ENST00000446333.1; RP11-168O16.1-002; OTTHUMT00000087052.1; NONHSAT008719
Alternative gene names: ENSG00000229191; RP11-168O16.1; ENSG00000229191.1; OTTHUMG00000035785.1; AL358473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4091 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INAVA-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf106-1:1
3.1 lnc-C1orf106-1:1
4.0 lnc-C1orf106-1:1
4.1 lnc-C1orf106-1:1
5.0 lnc-C1orf106-1:1
5.1 lnc-ADORA1-63:3
5.2 lnc-INAVA-1:3