Transcript: lnc-INAVA-1:12

Basic information

LNCipedia transcript ID: lnc-INAVA-1:12 
LNCipedia gene ID: lnc-INAVA-1
Ensembl Gene ID: ENSG00000234132
Ensembl Transcript ID: ENST00000415359
Location (hg38): chr1:201035096-201043073
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 508 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415359.1; RP11-168O16.2-001; OTTHUMT00000087053.2; NONHSAT008722
Alternative gene names: ENSG00000234132.1; RP11-168O16.2; OTTHUMG00000035786.2; ENSG00000234132.2; AL358473.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.6034 non-coding 
CPAT coding probability 8.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INAVA-1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf106-2:1
4.0 lnc-C1orf106-1:7
4.1 lnc-C1orf106-1:7
5.0 lnc-C1orf106-1:7
5.1 lnc-ADORA1-63:13
5.2 lnc-INAVA-1:12