Transcript: lnc-IL6-3:2

Basic information

LNCipedia transcript ID: lnc-IL6-3:2 
LNCipedia gene ID: lnc-IL6-3
Ensembl Gene ID: ENSG00000232759
Ensembl Transcript ID: ENST00000435127
Location (hg38): chr7:22563337-22573996
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2432 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435127; ENST00000435127.1; AC002480.3-001; OTTHUMT00000326621.1
Alternative gene names: ENSG00000232759; AC002480.3; ENSG00000232759.1; OTTHUMG00000152530.1; AC002480.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.6606 non-coding 
CPAT coding probability 3.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL6-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL6-3:2
3.1 lnc-IL6-3:2
4.0 lnc-IL6-3:2
4.1 lnc-IL6-3:2
5.0 lnc-IL6-3:2
5.1 lnc-SNX10-76:9
5.2 lnc-IL6-3:2