Transcript: lnc-IL34-1:2

Basic information

LNCipedia transcript ID: lnc-IL34-1:2 
LNCipedia gene ID: lnc-IL34-1
Location (hg38): chr16:70576301-70577668
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 399 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562874.1; RP11-49C24.1-001; OTTHUMT00000434923.1; NONHSAT143437
Alternative gene names: ENSG00000260023.1; RP11-49C24.1; OTTHUMG00000177022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -337.0724 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL34-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SF3B3-1:1
4.0 lnc-SF3B3-1:1
4.1 lnc-SF3B3-1:1
5.0 lnc-SF3B3-1:1
5.1 lnc-WWP2-25:1
5.2 lnc-IL34-1:2