Transcript: lnc-IL31RA-1:4

Basic information

LNCipedia transcript ID: lnc-IL31RA-1:4 
LNCipedia gene ID: lnc-IL31RA-1
Ensembl Gene ID: ENSG00000227908
Ensembl Transcript ID: ENST00000500093
RefSeq ID: NR_102755
Location (hg38): chr5:55995167-56003649
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2289 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500093.2; CTD-2031P19.3-001; OTTHUMT00000368521.2; NONHSAT101523; NR_102755.1
Alternative gene names: ENSG00000227908.3; CTD-2031P19.3; OTTHUMG00000162310.2; FLJ31104; AC016596.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.857 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL31RA-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2031P19.3.1-1:1
4.0 lnc-CTD-2031P19.3.1-1:1
4.1 lnc-CTD-2031P19.3.1-1:1
5.0 lnc-CTD-2031P19.3.1-1:1
5.1 lnc-GPBP1-69:3
5.2 lnc-IL31RA-1:4