Transcript: lnc-IKZF2-2:1

Basic information

LNCipedia transcript ID: lnc-IKZF2-2:1 
LNCipedia gene ID: lnc-IKZF2-2
Location (hg38): chr2:213237017-213238843
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004570; NONHSAT076710
Alternative gene names: XLOC_002477; linc-IKZF2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
WSQSGTRK 90.9090909090909% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.1798 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IKZF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IKZF2-2:1
3.1 lnc-IKZF2-2:1
4.0 lnc-IKZF2-2:1
4.1 lnc-IKZF2-2:1
5.0 lnc-IKZF2-2:1
5.1 lnc-FN1-11:1
5.2 lnc-IKZF2-2:1