Transcript: lnc-IGFBP7-3:1

Basic information

LNCipedia transcript ID: lnc-IGFBP7-3:1 
LNCipedia gene ID: lnc-IGFBP7-3
Ensembl Gene ID: ENSG00000250333
Ensembl Transcript ID: ENST00000507808
Location (hg38): chr4:57605694-57658800
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 356 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007762; ENST00000507808; ENST00000507808.1; RP11-4O3.1-001; OTTHUMT00000365846.1; NONHSAT096564
Alternative gene names: XLOC_003960; linc-IGFBP7-5; ENSG00000250333; RP11-4O3.1; ENSG00000250333.1; OTTHUMG00000161707.1; AC093725.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.6551 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP7-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP7-2:1
3.1 lnc-IGFBP7-3:1
4.0 lnc-IGFBP7-3:1
4.1 lnc-IGFBP7-3:1
5.0 lnc-IGFBP7-3:1
5.1 lnc-FRYL-63:1
5.2 lnc-IGFBP7-3:1