Transcript: lnc-IGFBP7-1:2

Basic information

LNCipedia transcript ID: lnc-IGFBP7-1:2 
LNCipedia gene ID: lnc-IGFBP7-1
Location (hg38): chr4:57032038-57040935
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 744 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000514062.1; RP11-738E22.2-002; OTTHUMT00000362250.1; NONHSAT096540
Alternative gene names: ENSG00000250610.1; RP11-738E22.2; OTTHUMG00000160777.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2653 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP7-1:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IGFBP7-1:2
4.0 lnc-IGFBP7-1:2
4.1 lnc-IGFBP7-1:2
5.0 lnc-IGFBP7-1:2
5.1 lnc-FRYL-60:3
5.2 lnc-IGFBP7-1:2