Transcript: lnc-IGF1R-1:2

Basic information

LNCipedia transcript ID: lnc-IGF1R-1:2 
LNCipedia gene ID: lnc-IGF1R-1
Location (hg38): chr15:99014704-99031046
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_126487
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.6266 non-coding 
CPAT coding probability 22.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGF1R-1:2 no no no no

Available literature

  1. Ma (2015), LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs., Nucleic Acids Res.
  2. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  3. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  4. Wang (2015), LncRNA NALT interaction with NOTCH1 promoted cell proliferation in pediatric T cell acute lymphoblastic leukemia., Sci Rep
  5. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica
  6. Trimarchi (2014), Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IGF1R-1:2
4.0 lnc-IGF1R-1:2
4.1 lnc-IGF1R-1:2
5.0 lnc-IGF1R-1:2
5.1 lnc-ARRDC4-20:2
5.2 lnc-IGF1R-1:2