Transcript: lnc-IFT20-1:1

Basic information

LNCipedia transcript ID: lnc-IFT20-1:1 
LNCipedia gene ID: lnc-IFT20-1
Location (hg38): chr17:28261828-28266918
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4474 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025601; NONHSAT052379
Alternative gene names: XLOC_012429; linc-C17orf108-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.6368 non-coding 
CPAT coding probability 3.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFT20-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFT20-1:1
3.1 lnc-IFT20-1:1
4.0 lnc-IFT20-1:1
4.1 lnc-IFT20-1:1
5.0 lnc-IFT20-1:1
5.1 lnc-SLC6A4-98:1
5.2 lnc-IFT20-1:1