Transcript: lnc-IFITM2-1:5

Basic information

LNCipedia transcript ID: lnc-IFITM2-1:5 
LNCipedia gene ID: lnc-IFITM2-1
Ensembl Gene ID: ENSG00000251661
Ensembl Transcript ID: ENST00000602429
Location (hg38): chr11:318653-325631
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1151 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT017227; ENST00000602429.1
Alternative gene names: ENSG00000251661.3; RP11-326C3.11; AC136475.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.8331 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFITM2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFITM2-1:2
4.0 lnc-IFITM1-1:2
4.1 lnc-IFITM1-1:2
5.0 lnc-IFITM1-1:2
5.1 lnc-OR51M1-139:2
5.2 lnc-IFITM2-1:5