Transcript: lnc-IFIT2-1:4

Basic information

LNCipedia transcript ID: lnc-IFIT2-1:4 
LNCipedia gene ID: lnc-IFIT2-1
Ensembl Gene ID: ENSG00000232110
Ensembl Transcript ID: ENST00000437032
Location (hg38): chr10:89283806-89284554
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 603 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437032.1; RP11-149I23.3-004; OTTHUMT00000049300.1; NONHSAT015507
Alternative gene names: ENSG00000232110.2; RP11-149I23.3; OTTHUMG00000018710.2; ENSG00000232110.3; ENSG00000232110.7; AL353751.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.7477 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IFIT2-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFIT2-1:4
4.0 lnc-IFIT2-1:4
4.1 lnc-IFIT2-1:4
5.0 lnc-IFIT2-1:4
5.1 lnc-SMC3-284:10
5.2 lnc-IFIT2-1:4