Transcript: lnc-IER3-15:4

Basic information

LNCipedia transcript ID: lnc-IER3-15:4 
LNCipedia gene ID: lnc-IER3-15
Location (hg38): chr6:30839526-30848253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 893 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237923.1|ENST00000442852.1
Alternative gene names: bQB230F21.2; FLJ40693; bQB10J12.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.4287 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IER3-15:4 no no no no

Available literature

  1. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  2. Horton (2008), Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00243:7
5.0 LINC00243:7
5.1 lnc-SFTA2-15:4
5.2 lnc-IER3-15:4