Transcript: lnc-ICE2-5:3

Basic information

LNCipedia transcript ID: lnc-ICE2-5:3 
LNCipedia gene ID: lnc-ICE2-5
Ensembl Gene ID: ENSG00000273792
Ensembl Transcript ID: ENST00000616822
Location (hg38): chr15:60847757-60849068
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1312 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616822.1
Alternative gene names: ENSG00000273792.1; RP11-554D20.2; AC022898.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.7715 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICE2-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NARG2-5:2
4.1 lnc-NARG2-5:2
5.0 lnc-NARG2-5:2
5.1 lnc-ICE2-8:2
5.2 lnc-ICE2-5:3