Transcript: lnc-HSPH1-6:1

Basic information

LNCipedia transcript ID: lnc-HSPH1-6:1 
LNCipedia gene ID: lnc-HSPH1-6
Location (hg38): chr13:31371091-31373277
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021966; NONHSAT033040
Alternative gene names: XLOC_010562; linc-HSPH1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.9712 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HSPH1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HSPH1-3:1
3.1 lnc-HSPH1-6:1
4.0 lnc-HSPH1-6:1
4.1 lnc-HSPH1-6:1
5.0 lnc-HSPH1-6:1
5.1 lnc-UBL3-14:1
5.2 lnc-HSPH1-6:1